%0 Conference Proceedings %T Biological, translational, and clinical language processing %E Cohen, K. Bretonnel %E Demner-Fushman, Dina %E Friedman, Carol %E Hirschman, Lynette %E Pestian, John %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F ws-2007-biological %U https://aclanthology.org/W07-1000 %0 Conference Proceedings %T Syntactic complexity measures for detecting Mild Cognitive Impairment %A Roark, Brian %A Mitchell, Margaret %A Hollingshead, Kristy %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F roark-etal-2007-syntactic %U https://aclanthology.org/W07-1001 %P 1-8 %0 Conference Proceedings %T Determining the Syntactic Structure of Medical Terms in Clinical Notes %A McInnes, Bridget %A Pedersen, Ted %A Pakhomov, Serguei %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F mcinnes-etal-2007-determining %U https://aclanthology.org/W07-1002 %P 9-16 %0 Conference Proceedings %T The Role of Roles in Classifying Annotated Biomedical Text %A Doan, Son %A Kawazoe, Ai %A Collier, Nigel %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F doan-etal-2007-role %U https://aclanthology.org/W07-1003 %P 17-24 %0 Conference Proceedings %T On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA %A Pyysalo, Sampo %A Ginter, Filip %A Laippala, Veronika %A Haverinen, Katri %A Heimonen, Juho %A Salakoski, Tapio %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F pyysalo-etal-2007-unification %U https://aclanthology.org/W07-1004 %P 25-32 %0 Conference Proceedings %T An Unsupervised Method for Extracting Domain-specific Affixes in Biological Literature %A Liu, Haibin %A Blouin, Christian %A Kešelj, Vlado %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F liu-etal-2007-unsupervised %U https://aclanthology.org/W07-1005 %P 33-40 %0 Conference Proceedings %T Combining multiple evidence for gene symbol disambiguation %A Xu, Hua %A Fan, Jung-Wei %A Friedman, Carol %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F xu-etal-2007-combining %U https://aclanthology.org/W07-1006 %P 41-48 %0 Conference Proceedings %T Mining a Lexicon of Technical Terms and Lay Equivalents %A Elhadad, Noemie %A Sutaria, Komal %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F elhadad-sutaria-2007-mining %U https://aclanthology.org/W07-1007 %P 49-56 %0 Conference Proceedings %T Annotation of Chemical Named Entities %A Corbett, Peter %A Batchelor, Colin %A Teufel, Simone %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F corbett-etal-2007-annotation %U https://aclanthology.org/W07-1008 %P 57-64 %0 Conference Proceedings %T Recognising Nested Named Entities in Biomedical Text %A Alex, Beatrice %A Haddow, Barry %A Grover, Claire %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F alex-etal-2007-recognising %U https://aclanthology.org/W07-1009 %P 65-72 %0 Conference Proceedings %T Exploring the Efficacy of Caption Search for Bioscience Journal Search Interfaces %A Hearst, Marti %A Divoli, Anna %A Jerry, Ye %A Wooldridge, Michael %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F hearst-etal-2007-exploring %U https://aclanthology.org/W07-1010 %P 73-80 %0 Conference Proceedings %T ConText: An Algorithm for Identifying Contextual Features from Clinical Text %A Chapman, Wendy %A Dowling, John %A Chu, David %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F chapman-etal-2007-context %U https://aclanthology.org/W07-1011 %P 81-88 %0 Conference Proceedings %T BioNoculars: Extracting Protein-Protein Interactions from Biomedical Text %A Madkour, Amgad %A Darwish, Kareem %A Hassan, Hany %A Hassan, Ahmed %A Emam, Ossama %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F madkour-etal-2007-bionoculars %U https://aclanthology.org/W07-1012 %P 89-96 %0 Conference Proceedings %T A shared task involving multi-label classification of clinical free text %A Pestian, John P. %A Brew, Chris %A Matykiewicz, Pawel %A Hovermale, D. J. %A Johnson, Neil %A Cohen, K. Bretonnel %A Duch, Wlodzislaw %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F pestian-etal-2007-shared %U https://aclanthology.org/W07-1013 %P 97-104 %0 Conference Proceedings %T From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches %A Aronson, Alan R. %A Bodenreider, Olivier %A Demner-Fushman, Dina %A Fung, Kin Wah %A Lee, Vivian K. %A Mork, James G. %A Névéol, Aurélie %A Peters, Lee %A Rogers, Willie J. %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F aronson-etal-2007-indexing %U https://aclanthology.org/W07-1014 %P 105-112 %0 Conference Proceedings %T Automatically Restructuring Practice Guidelines using the GEM DTD %A Bouffier, Amanda %A Poibeau, Thierry %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F bouffier-poibeau-2007-automatically %U https://aclanthology.org/W07-1015 %P 113-120 %0 Conference Proceedings %T A Study of Structured Clinical Abstracts and the Semantic Classification of Sentences %A Chung, Grace %A Coiera, Enrico %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F chung-coiera-2007-study %U https://aclanthology.org/W07-1016 %P 121-128 %0 Conference Proceedings %T Automatic Code Assignment to Medical Text %A Crammer, Koby %A Dredze, Mark %A Ganchev, Kuzman %A Pratim Talukdar, Partha %A Carroll, Steven %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F crammer-etal-2007-automatic %U https://aclanthology.org/W07-1017 %P 129-136 %0 Conference Proceedings %T Interpreting comparative constructions in biomedical text %A Fiszman, Marcelo %A Demner-Fushman, Dina %A Lang, Francois M. %A Goetz, Philip %A Rindflesch, Thomas C. %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F fiszman-etal-2007-interpreting %U https://aclanthology.org/W07-1018 %P 137-144 %0 Conference Proceedings %T The Extraction of Enriched Protein-Protein Interactions from Biomedical Text %A Haddow, Barry %A Matthews, Michael %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F haddow-matthews-2007-extraction %U https://aclanthology.org/W07-1019 %P 145-152 %0 Conference Proceedings %T What’s in a gene name? Automated refinement of gene name dictionaries %A Hakenberg, Jörg %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F hakenberg-2007-whats %U https://aclanthology.org/W07-1020 %P 153-160 %0 Conference Proceedings %T Exploring the Use of NLP in the Disclosure of Electronic Patient Records %A Hardcastle, David %A Hallett, Catalina %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F hardcastle-hallett-2007-exploring %U https://aclanthology.org/W07-1021 %P 161-162 %0 Conference Proceedings %T BaseNPs that contain gene names: domain specificity and genericity %A Lewin, Ian %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F lewin-2007-basenps %U https://aclanthology.org/W07-1022 %P 163-170 %0 Conference Proceedings %T Challenges for extracting biomedical knowledge from full text %A McIntosh, Tara %A Curran, James R. %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F mcintosh-curran-2007-challenges %U https://aclanthology.org/W07-1023 %P 171-178 %0 Conference Proceedings %T Adaptation of POS Tagging for Multiple BioMedical Domains %A Miller, John E. %A Torii, Manabu %A Vijay-Shanker, K. %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F miller-etal-2007-adaptation %U https://aclanthology.org/W07-1024 %P 179-180 %0 Conference Proceedings %T Information Extraction from Patients’ Free Form Documentation %A Mykowiecka, Agnieszka %A Marciniak, Malgorzata %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F mykowiecka-marciniak-2007-information %U https://aclanthology.org/W07-1025 %P 181-182 %0 Conference Proceedings %T Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations %A Névéol, Aurélie %A Mork, James G. %A Aronson, Alan R. %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F neveol-etal-2007-automatic %U https://aclanthology.org/W07-1026 %P 183-190 %0 Conference Proceedings %T Developing Feature Types for Classifying Clinical Notes %A Patrick, Jon %A Zhang, Yitao %A Wang, Yefeng %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F patrick-etal-2007-developing %U https://aclanthology.org/W07-1027 %P 191-192 %0 Conference Proceedings %T Quantitative Data on Referring Expressions in Biomedical Abstracts %A Poprat, Michael %A Hahn, Udo %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F poprat-hahn-2007-quantitative %U https://aclanthology.org/W07-1028 %P 193-194 %0 Conference Proceedings %T Discovering contradicting protein-protein interactions in text %A Sanchez, Olivia %A Poesio, Massimo %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F sanchez-poesio-2007-discovering %U https://aclanthology.org/W07-1029 %P 195-196 %0 Conference Proceedings %T Marking time in developmental biology %A Sinclair, Gail %A Webber, Bonnie %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F sinclair-webber-2007-marking %U https://aclanthology.org/W07-1030 %P 197-198 %0 Conference Proceedings %T Evaluating and combining and biomedical named entity recognition systems %A Vlachos, Andreas %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F vlachos-2007-evaluating %U https://aclanthology.org/W07-1031 %P 199-200 %0 Conference Proceedings %T Unsupervised Learning of the Morpho-Semantic Relationship in MEDLINE %A Wilbur, W. John %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F wilbur-2007-unsupervised %U https://aclanthology.org/W07-1032 %P 201-208 %0 Conference Proceedings %T Reranking for Biomedical Named-Entity Recognition %A Yoshida, Kazuhiro %A Tsujii, Jun’ichi %Y Cohen, K. Bretonnel %Y Demner-Fushman, Dina %Y Friedman, Carol %Y Hirschman, Lynette %Y Pestian, John %S Biological, translational, and clinical language processing %D 2007 %8 June %I Association for Computational Linguistics %C Prague, Czech Republic %F yoshida-tsujii-2007-reranking %U https://aclanthology.org/W07-1033 %P 209-216