Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing

Dina Demner-Fushman, Sophia Ananiadou, Kevin Bretonnel Cohen, John Pestian, Jun’ichi Tsujii, Bonnie Webber (Editors)


Anthology ID:
W08-06
Month:
June
Year:
2008
Address:
Columbus, Ohio
Venues:
BioNLP | WS
SIG:
Publisher:
Association for Computational Linguistics
URL:
https://aclanthology.org/W08-06
DOI:
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PDF:
https://aclanthology.org/W08-06.pdf

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Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
Dina Demner-Fushman | Sophia Ananiadou | Kevin Bretonnel Cohen | John Pestian | Jun’ichi Tsujii | Bonnie Webber

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A Graph Kernel for Protein-Protein Interaction Extraction
Antti Airola | Sampo Pyysalo | Jari Björne | Tapio Pahikkala | Filip Ginter | Tapio Salakoski

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Extracting Clinical Relationships from Patient Narratives
Angus Roberts | Robert Gaizauskas | Mark Hepple

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Using Automated Feature Optimisation to Create an Adaptable Relation Extraction System
Barry Haddow

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Mining the Biomedical Literature for Genic Information
Catalina O. Tudor | K. Vijay-Shanker | Carl J. Schmidt

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Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection
Yoshimasa Tsuruoka | Jun’ichi Tsujii | Sophia Ananiadou

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The BioScope corpus: annotation for negation, uncertainty and their scope in biomedical texts
György Szarvas | Veronika Vincze | Richárd Farkas | János Csirik

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Recognizing Speculative Language in Biomedical Research Articles: A Linguistically Motivated Perspective
Halil Kilicoglu | Sabine Bergler

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Cascaded Classifiers for Confidence-Based Chemical Named Entity Recognition
Peter Corbett | Ann Copestake

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How to Make the Most of NE Dictionaries in Statistical NER
Yutaka Sasaki | Yoshimasa Tsuruoka | John McNaught | Sophia Ananiadou

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Species Disambiguation for Biomedical Term Identification
Xinglong Wang | Michael Matthews

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Knowledge Sources for Word Sense Disambiguation of Biomedical Text
Mark Stevenson | Yinkun Guo | Robert Gaizauskas | David Martinez

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Automatic inference of indexing rules for MEDLINE
Aurélie Névéol | Sonya Shooshan | Vincent Claveau

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Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences.
Hong-Woo Chun | Chisato Yamasaki | Naomi Saichi | Masayuki Tanaka | Teruyoshi Hishiki | Tadashi Imanishi | Takashi Gojobori | Jin-Dong Kim | Jun’ichi Tsujii | Toshihisa Takagi

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A Pilot Annotation to Investigate Discourse Connectivity in Biomedical Text
Hong Yu | Nadya Frid | Susan McRoy | Rashmi Prasad | Alan Lee | Aravind Joshi

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Conditional Random Fields and Support Vector Machines for Disorder Named Entity Recognition in Clinical Texts
Dingcheng Li | Guergana Savova | Karin Kipper-Schuler

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Using Natural Language Processing to Classify Suicide Notes
John Pestian | Pawel Matykiewicz | Jacqueline Grupp-Phelan | Sarah Arszman Lavanier | Jennifer Combs | Robert Kowatch

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Extracting Protein-Protein Interaction based on Discriminative Training of the Hidden Vector State Model
Deyu Zhou | Yulan He

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A preliminary approach to extract drugs by combining UMLS resources and USAN naming conventions
Isabel Segura-Bedmar | Paloma Martínez | Doaa Samy

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Mapping Clinical Notes to Medical Terminologies at Point of Care
Yefeng Wang | Jon Patrick

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An Approach to Reducing Annotation Costs for BioNLP
Michael Bloodgood | K. Vijay-Shanker

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Temporal Annotation of Clinical Text
Danielle Mowery | Henk Harkema | Wendy Chapman

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CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem
Mariana Neves | Monica Chagoyen | José María Carazo | Alberto Pascual-Montano

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Textual Information for Predicting Functional Properties of the Genes
Oana Frunza | Diana Inkpen

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Determining causal and non-causal relationships in biomedical text by classifying verbs using a Naive Bayesian Classifier
Pieter van der Horn | Bart Bakker | Gijs Geleijnse | Jan Korst | Sergei Kurkin

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Statistical Term Profiling for Query Pattern Mining
Paul Buitelaar | Pinar Oezden Wennerberg | Sonja Zillner

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Using Language Models to Identify Language Impairment in Spanish-English Bilingual Children
Thamar Solorio | Yang Liu

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Raising the Compatibility of Heterogeneous Annotations: A Case Study on
Yue Wang | Kazuhiro Yoshida | Jin-Dong Kim | Rune Saetre | Jun’ichi Tsujii

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Adaptive Information Extraction for Complex Biomedical Tasks
Donghui Feng | Gully Burns | Eduard Hovy