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Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
K. Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | John Pestian | Jun’ichi Tsujii | Bonnie Webber

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Two Strong Baselines for the BioNLP 2009 Event Extraction Task
Andreas Vlachos

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Recognizing Biomedical Named Entities Using Skip-Chain Conditional Random Fields
Jingchen Liu | Minlie Huang | Xiaoyan Zhu

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Event Extraction for Post-Translational Modifications
Tomoko Ohta | Sampo Pyysalo | Makoto Miwa | Jin-Dong Kim | Jun’ichi Tsujii

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Scaling up Biomedical Event Extraction to the Entire PubMed
Jari Björne | Filip Ginter | Sampo Pyysalo | Jun’ichi Tsujii | Tapio Salakoski

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A Comparative Study of Syntactic Parsers for Event Extraction
Makoto Miwa | Sampo Pyysalo | Tadayoshi Hara | Jun’ichi Tsujii

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Arguments of Nominals in Semantic Interpretation of Biomedical Text
Halil Kilicoglu | Marcelo Fiszman | Graciela Rosemblat | Sean Marimpietri | Thomas Rindflesch

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Improving Summarization of Biomedical Documents Using Word Sense Disambiguation
Laura Plaza | Mark Stevenson | Alberto Díaz

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Cancer Stage Prediction Based on Patient Online Discourse
Mukund Jha | Noémie Elhadad

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An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical Text
Martin Gerner | Goran Nenadic | Casey M. Bergman

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Exploring Surface-Level Heuristics for Negation and Speculation Discovery in Clinical Texts
Emilia Apostolova | Noriko Tomuro

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Disease Mention Recognition with Specific Features
Md. Faisal Mahbub Chowdhury | Alberto Lavelli

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Extraction of Disease-Treatment Semantic Relations from Biomedical Sentences
Oana Frunza | Diana Inkpen

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Identifying the Information Structure of Scientific Abstracts: An Investigation of Three Different Schemes
Yufan Guo | Anna Korhonen | Maria Liakata | Ilona Silins | Lin Sun | Ulla Stenius

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Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain
Juho Heimonen | Jari Björne | Tapio Salakoski

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Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks
Robert Leaman | Laura Wojtulewicz | Ryan Sullivan | Annie Skariah | Jian Yang | Graciela Gonzalez

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Semantic Role Labeling of Gene Regulation Events: Preliminary Results
Roser Morante

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Ontology-Based Extraction and Summarization of Protein Mutation Impact Information
Nona Naderi | René Witte

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Extracting Distinctive Features of Swine (H1N1) Flu through Data Mining Clinical Documents
Heekyong Park | Jinwook Choi

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Towards Event Extraction from Full Texts on Infectious Diseases
Sampo Pyysalo | Tomoko Ohta | Han-Cheol Cho | Dan Sullivan | Chunhong Mao | Bruno Sobral | Jun’ichi Tsujii | Sophia Ananiadou

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Applying the TARSQI Toolkit to Augment Text Mining of EHRs
Amber Stubbs | Benjamin Harshfield

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Integration of Static Relations to Enhance Event Extraction from Text
Sofie Van Landeghem | Sampo Pyysalo | Tomoko Ohta | Yves Van de Peer