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Proceedings of BioNLP Shared Task 2011 Workshop
Jun’ichi Tsujii | Jin-Dong Kim | Sampo Pyysalo

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Overview of BioNLP Shared Task 2011
Jin-Dong Kim | Sampo Pyysalo | Tomoko Ohta | Robert Bossy | Ngan Nguyen | Jun’ichi Tsujii

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Overview of Genia Event Task in BioNLP Shared Task 2011
Jin-Dong Kim | Yue Wang | Toshihisa Takagi | Akinori Yonezawa

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Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011
Tomoko Ohta | Sampo Pyysalo | Jun’ichi Tsujii

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Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011
Sampo Pyysalo | Tomoko Ohta | Rafal Rak | Dan Sullivan | Chunhong Mao | Chunxia Wang | Bruno Sobral | Jun’ichi Tsujii | Sophia Ananiadou

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Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction
Andreas Vlachos | Mark Craven

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Event Extraction as Dependency Parsing for BioNLP 2011
David McClosky | Mihai Surdeanu | Christopher Manning

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Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation
Sebastian Riedel | Andrew McCallum

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Model Combination for Event Extraction in BioNLP 2011
Sebastian Riedel | David McClosky | Mihai Surdeanu | Andrew McCallum | Christopher D. Manning

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BioNLP Shared Task 2011 - Bacteria Biotope
Robert Bossy | Julien Jourde | Philippe Bessières | Maarten van de Guchte | Claire Nédellec

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BioNLP Shared Task 2011 – Bacteria Gene Interactions and Renaming
Julien Jourde | Alain-Pierre Manine | Philippe Veber | Karën Fort | Robert Bossy | Erick Alphonse | Philippe Bessières

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Overview of BioNLP 2011 Protein Coreference Shared Task
Ngan Nguyen | Jin-Dong Kim | Jun’ichi Tsujii

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Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011
Sampo Pyysalo | Tomoko Ohta | Jun’ichi Tsujii

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The Taming of Reconcile as a Biomedical Coreference Resolver
Youngjun Kim | Ellen Riloff | Nathan Gilbert

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Extracting Bacteria Biotopes with Semi-supervised Named Entity Recognition and Coreference Resolution
Nhung T. H. Nguyen | Yoshimasa Tsuruoka

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BioNLP 2011 Task Bacteria Biotope – The Alvis system
Zorana Ratkovic | Wiktoria Golik | Pierre Warnier | Philippe Veber | Claire Nédellec

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BioNLP Shared Task 2011: Supporting Resources
Pontus Stenetorp | Goran Topić | Sampo Pyysalo | Tomoko Ohta | Jin-Dong Kim | Jun’ichi Tsujii

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Sentence Filtering for BioNLP: Searching for Renaming Acts
Pierre Warnier | Claire Nédellec

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Complex Biological Event Extraction from Full Text using Signatures of Linguistic and Semantic Features
Liam R. McGrath | Kelly Domico | Courtney D. Corley | Bobbie-Jo Webb-Robertson

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Using Kybots for Extracting Events in Biomedical Texts
Arantza Casillas | Arantza Díaz de Ilarraza | Koldo Gojenola | Maite Oronoz | German Rigau

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Extracting Biological Events from Text Using Simple Syntactic Patterns
Quoc-Chinh Bui | Peter M.A. Sloot

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Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction
Sofie Van Landeghem | Thomas Abeel | Bernard De Baets | Yves Van de Peer

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A Pattern Approach for Biomedical Event Annotation
Quang Le Minh | Son Nguyen Truong | Quoc Ho Bao

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An Incremental Model for the Coreference Resolution Task of BioNLP 2011
Don Tuggener | Manfred Klenner | Gerold Schneider | Simon Clematide | Fabio Rinaldi

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Double Layered Learning for Biological Event Extraction from Text
Ehsan Emadzadeh | Azadeh Nikfarjam | Graciela Gonzalez

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MSR-NLP Entry in BioNLP Shared Task 2011
Chris Quirk | Pallavi Choudhury | Michael Gamon | Lucy Vanderwende

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From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text
Haibin Liu | Ravikumar Komandur | Karin Verspoor

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Adapting a General Semantic Interpretation Approach to Biological Event Extraction
Halil Kilicoglu | Sabine Bergler

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Generalizing Biomedical Event Extraction
Jari Björne | Tapio Salakoski