BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
2012-06
Association for Computational Linguistics
Montréal, Canada
text
conference publication
ws-2012-bionlp
https://aclanthology.org/W12-2400
Graph-based alignment of narratives for automated neurological assessment
Emily
Prud’hommeaux
author
Brian
Roark
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
prudhommeaux-roark-2012-graph
https://aclanthology.org/W12-2401
2012-06
1
10
Bootstrapping Biomedical Ontologies for Scientific Text using NELL
Dana
Movshovitz-Attias
author
William
W
Cohen
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
movshovitz-attias-cohen-2012-bootstrapping
https://aclanthology.org/W12-2402
2012-06
11
19
Semantic distance and terminology structuring methods for the detection of semantically close terms
Marie
Dupuch
author
Laëtitia
Dupuch
author
Thierry
Hamon
author
Natalia
Grabar
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
dupuch-etal-2012-semantic
https://aclanthology.org/W12-2403
2012-06
20
28
Temporal Classification of Medical Events
Preethi
Raghavan
author
Eric
Fosler-Lussier
author
Albert
Lai
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
raghavan-etal-2012-temporal
https://aclanthology.org/W12-2404
2012-06
29
37
Analyzing Patient Records to Establish If and When a Patient Suffered from a Medical Condition
James
Cogley
author
Nicola
Stokes
author
Joe
Carthy
author
John
Dunnion
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
cogley-etal-2012-analyzing
https://aclanthology.org/W12-2405
2012-06
38
46
Alignment-HMM-based Extraction of Abbreviations from Biomedical Text
Dana
Movshovitz-Attias
author
William
W
Cohen
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
movshovitz-attias-cohen-2012-alignment
https://aclanthology.org/W12-2406
2012-06
47
55
Medical diagnosis lost in translation – Analysis of uncertainty and negation expressions in English and Swedish clinical texts
Danielle
L
Mowery
author
Sumithra
Velupillai
author
Wendy
W
Chapman
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
mowery-etal-2012-medical
https://aclanthology.org/W12-2407
2012-06
56
64
A Hybrid Stepwise Approach for De-identifying Person Names in Clinical Documents
Oscar
Ferrández
author
Brett
South
author
Shuying
Shen
author
Stéphane
Meystre
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
ferrandez-etal-2012-hybrid
https://aclanthology.org/W12-2408
2012-06
65
72
Active Learning for Coreference Resolution
Timothy
Miller
author
Dmitriy
Dligach
author
Guergana
Savova
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
miller-etal-2012-active
https://aclanthology.org/W12-2409
2012-06
73
81
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations
Jari
Björne
author
Sofie
Van Landeghem
author
Sampo
Pyysalo
author
Tomoko
Ohta
author
Filip
Ginter
author
Yves
Van de Peer
author
Sophia
Ananiadou
author
Tapio
Salakoski
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
bjorne-etal-2012-pubmed
https://aclanthology.org/W12-2410
2012-06
82
90
An improved corpus of disease mentions in PubMed citations
Rezarta
Islamaj Doğan
author
Zhiyong
Lu
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
islamaj-dogan-lu-2012-improved
https://aclanthology.org/W12-2411
2012-06
91
99
New Resources and Perspectives for Biomedical Event Extraction
Sampo
Pyysalo
author
Pontus
Stenetorp
author
Tomoko
Ohta
author
Jin-Dong
Kim
author
Sophia
Ananiadou
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
pyysalo-etal-2012-new
https://aclanthology.org/W12-2412
2012-06
100
108
Combining Compositionality and Pagerank for the Identification of Semantic Relations between Biomedical Words
Thierry
Hamon
author
Christopher
Engström
author
Mounira
Manser
author
Zina
Badji
author
Natalia
Grabar
author
Sergei
Silvestrov
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
hamon-etal-2012-combining
https://aclanthology.org/W12-2413
2012-06
109
117
Domain Adaptation of Coreference Resolution for Radiology Reports
Emilia
Apostolova
author
Noriko
Tomuro
author
Pattanasak
Mongkolwat
author
Dina
Demner-Fushman
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
apostolova-etal-2012-domain
https://aclanthology.org/W12-2414
2012-06
118
121
What can NLP tell us about BioNLP?
Attapol
Thamrongrattanarit
author
Michael
Shafir
author
Michael
Crivaro
author
Bensiin
Borukhov
author
Marie
Meteer
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
thamrongrattanarit-etal-2012-nlp
https://aclanthology.org/W12-2415
2012-06
122
129
A Prototype Tool Set to Support Machine-Assisted Annotation
Brett
South
author
Shuying
Shen
author
Jianwei
Leng
author
Tyler
Forbush
author
Scott
DuVall
author
Wendy
Chapman
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
south-etal-2012-prototype
https://aclanthology.org/W12-2416
2012-06
130
139
MedLingMap: A growing resource mapping the Bio-Medical NLP field
Marie
Meteer
author
Bensiin
Borukhov
author
Mike
Crivaro
author
Michael
Shafir
author
Attapol
Thamrongrattanarit
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
meteer-etal-2012-medlingmap
https://aclanthology.org/W12-2417
2012-06
140
145
Exploring Label Dependency in Active Learning for Phenotype Mapping
Shefali
Sharma
author
Leslie
Lange
author
Jose
Luis
Ambite
author
Yigal
Arens
author
Chun-Nan
Hsu
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
sharma-etal-2012-exploring
https://aclanthology.org/W12-2418
2012-06
146
154
Evaluating Joint Modeling of Yeast Biology Literature and Protein-Protein Interaction Networks
Ramnath
Balasubramanyan
author
Kathryn
Rivard
author
William
W
Cohen
author
Jelena
Jakovljevic
author
John
L
Woolford
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
balasubramanyan-etal-2012-evaluating
https://aclanthology.org/W12-2419
2012-06
155
162
RankPref: Ranking Sentences Describing Relations between Biomedical Entities with an Application
Catalina
Oana
Tudor
author
K
Vijay-Shanker
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
tudor-vijay-shanker-2012-rankpref
https://aclanthology.org/W12-2420
2012-06
163
171
Finding small molecule and protein pairs in scientific literature using a bootstrapping method
Ying
Yan
author
Jee-Hyub
Kim
author
Samuel
Croset
author
Dietrich
Rebholz-Schuhmann
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
yan-etal-2012-finding
https://aclanthology.org/W12-2421
2012-06
172
175
Grading the Quality of Medical Evidence
Binod
Gyawali
author
Thamar
Solorio
author
Yassine
Benajiba
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
gyawali-etal-2012-grading
https://aclanthology.org/W12-2422
2012-06
176
184
Classifying Gene Sentences in Biomedical Literature by Combining High-Precision Gene Identifiers
Sun
Kim
author
Won
Kim
author
Don
Comeau
author
W
John
Wilbur
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
kim-etal-2012-classifying
https://aclanthology.org/W12-2423
2012-06
185
192
Effect of small sample size on text categorization with support vector machines
Pawel
Matykiewicz
author
John
Pestian
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
matykiewicz-pestian-2012-effect
https://aclanthology.org/W12-2424
2012-06
193
201
PubAnnotation - a persistent and sharable corpus and annotation repository
Jin-Dong
Kim
author
Yue
Wang
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
kim-wang-2012-pubannotation
https://aclanthology.org/W12-2425
2012-06
202
205
Using Natural Language Processing to Extract Drug-Drug Interaction Information from Package Inserts
Richard
Boyce
author
Gregory
Gardner
author
Henk
Harkema
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
boyce-etal-2012-using
https://aclanthology.org/W12-2426
2012-06
206
213
Automatic Approaches for Gene-Drug Interaction Extraction from Biomedical Text: Corpus and Comparative Evaluation
Nate
Sutton
author
Laura
Wojtulewicz
author
Neel
Mehta
author
Graciela
Gonzalez
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
sutton-etal-2012-automatic
https://aclanthology.org/W12-2427
2012-06
214
222
A Preliminary Work on Symptom Name Recognition from Free-Text Clinical Records of Traditional Chinese Medicine using Conditional Random Fields and Reasonable Features
Yaqiang
Wang
author
Yiguang
Liu
author
Zhonghua
Yu
author
Li
Chen
author
Yongguang
Jiang
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
wang-etal-2012-preliminary
https://aclanthology.org/W12-2428
2012-06
223
230
Scaling up WSD with Automatically Generated Examples
Weiwei
Cheng
author
Judita
Preiss
author
Mark
Stevenson
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
cheng-etal-2012-scaling
https://aclanthology.org/W12-2429
2012-06
231
239
Boosting the protein name recognition performance by bootstrapping on selected text
Yue
Wang
author
Jin-Dong
Kim
author
2012-06
text
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language Processing
Kevin
B
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Bonnie
Webber
editor
Jun’ichi
Tsujii
editor
John
Pestian
editor
Association for Computational Linguistics
Montréal, Canada
conference publication
wang-kim-2012-boosting
https://aclanthology.org/W12-2430
2012-06
240
243