%0 Conference Proceedings %T Proceedings of the BioNLP Shared Task 2013 Workshop %E Nédellec, Claire %E Bossy, Robert %E Kim, Jin-Dong %E Kim, Jung-jae %E Ohta, Tomoko %E Pyysalo, Sampo %E Zweigenbaum, Pierre %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F ws-2013-bionlp %U https://aclanthology.org/W13-2000 %0 Conference Proceedings %T Overview of BioNLP Shared Task 2013 %A Nédellec, Claire %A Bossy, Robert %A Kim, Jin-Dong %A Kim, Jung-jae %A Ohta, Tomoko %A Pyysalo, Sampo %A Zweigenbaum, Pierre %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F nedellec-etal-2013-overview %U https://aclanthology.org/W13-2001 %P 1-7 %0 Conference Proceedings %T The Genia Event Extraction Shared Task, 2013 Edition - Overview %A Kim, Jin-Dong %A Wang, Yue %A Yasunori, Yamamoto %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F kim-etal-2013-genia %U https://aclanthology.org/W13-2002 %P 8-15 %0 Conference Proceedings %T TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task %A Björne, Jari %A Salakoski, Tapio %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F bjorne-salakoski-2013-tees %U https://aclanthology.org/W13-2003 %P 16-25 %0 Conference Proceedings %T EVEX in ST’13: Application of a large-scale text mining resource to event extraction and network construction %A Hakala, Kai %A Van Landeghem, Sofie %A Salakoski, Tapio %A Van de Peer, Yves %A Ginter, Filip %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F hakala-etal-2013-evex %U https://aclanthology.org/W13-2004 %P 26-34 %0 Conference Proceedings %T Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data %A MacKinlay, Andrew %A Martinez, David %A Jimeno Yepes, Antonio %A Liu, Haibin %A Wilbur, W. John %A Verspoor, Karin %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F mackinlay-etal-2013-extracting %U https://aclanthology.org/W13-2005 %P 35-44 %0 Conference Proceedings %T Biomedical Event Extraction by Multi-class Classification of Pairs of Text Entities %A Liu, Xiao %A Bordes, Antoine %A Grandvalet, Yves %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F liu-etal-2013-biomedical %U https://aclanthology.org/W13-2006 %P 45-49 %0 Conference Proceedings %T GRO Task: Populating the Gene Regulation Ontology with events and relations %A Kim, Jung-jae %A Han, Xu %A Lee, Vivian %A Rebholz-Schuhmann, Dietrich %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F kim-etal-2013-gro %U https://aclanthology.org/W13-2007 %P 50-57 %0 Conference Proceedings %T Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013 %A Pyysalo, Sampo %A Ohta, Tomoko %A Ananiadou, Sophia %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F pyysalo-etal-2013-overview %U https://aclanthology.org/W13-2008 %P 58-66 %0 Conference Proceedings %T Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013 %A Ohta, Tomoko %A Pyysalo, Sampo %A Rak, Rafal %A Rowley, Andrew %A Chun, Hong-Woo %A Jung, Sung-Jae %A Choi, Sung-Pil %A Ananiadou, Sophia %A Tsujii, Jun’ichi %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F ohta-etal-2013-overview %U https://aclanthology.org/W13-2009 %P 67-75 %0 Conference Proceedings %T Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics %A Liu, Haibin %A Verspoor, Karin %A Comeau, Donald C. %A MacKinlay, Andrew %A Wilbur, W. John %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F liu-etal-2013-generalizing %U https://aclanthology.org/W13-2010 %P 76-85 %0 Conference Proceedings %T Performance and limitations of the linguistically motivated Cocoa/Peaberry system in a broad biological domain. %A Ramanan, S. V. %A Nathan, P. Senthil %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F ramanan-nathan-2013-performance %U https://aclanthology.org/W13-2011 %P 86-93 %0 Conference Proceedings %T NaCTeM EventMine for BioNLP 2013 CG and PC tasks %A Miwa, Makoto %A Ananiadou, Sophia %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F miwa-ananiadou-2013-nactem %U https://aclanthology.org/W13-2012 %P 94-98 %0 Conference Proceedings %T BioNLP Shared Task 2013: Supporting Resources %A Stenetorp, Pontus %A Golik, Wiktoria %A Hamon, Thierry %A Comeau, Donald C. %A Islamaj Doğan, Rezarta %A Liu, Haibin %A Wilbur, W. John %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F stenetorp-etal-2013-bionlp %U https://aclanthology.org/W13-2013 %P 99-103 %0 Conference Proceedings %T A fast rule-based approach for biomedical event extraction %A Bui, Quoc-Chinh %A Campos, David %A van Mulligen, Erik %A Kors, Jan %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F bui-etal-2013-fast %U https://aclanthology.org/W13-2014 %P 104-108 %0 Conference Proceedings %T Improving Feature-Based Biomedical Event Extraction System by Integrating Argument Information %A Li, Lishuang %A Wang, Yiwen %A Huang, Degen %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F li-etal-2013-improving %U https://aclanthology.org/W13-2015 %P 109-115 %0 Conference Proceedings %T UZH in BioNLP 2013 %A Schneider, Gerold %A Clematide, Simon %A Ellendorff, Tilia %A Tuggener, Don %A Rinaldi, Fabio %A Grigonytė, Gintarė %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F schneider-etal-2013-uzh %U https://aclanthology.org/W13-2016 %P 116-120 %0 Conference Proceedings %T A Hybrid approach for biomedical event extraction %A Pham, Xuan Quang %A Le, Minh Quang %A Ho, Bao Quoc %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F pham-etal-2013-hybrid %U https://aclanthology.org/W13-2017 %P 121-124 %0 Conference Proceedings %T Identification of Genia Events using Multiple Classifiers %A Roller, Roland %A Stevenson, Mark %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F roller-stevenson-2013-identification %U https://aclanthology.org/W13-2018 %P 125-129 %0 Conference Proceedings %T Exploring a Probabilistic Earley Parser for Event Composition in Biomedical Texts %A Tran, Mai-Vu %A Collier, Nigel %A Le, Hoang-Quynh %A Phi, Van-Thuy %A Pham, Thanh-Binh %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F tran-etal-2013-exploring %U https://aclanthology.org/W13-2019 %P 130-134 %0 Conference Proceedings %T Detecting Relations in the Gene Regulation Network %A Provoost, Thomas %A Moens, Marie-Francine %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F provoost-moens-2013-detecting %U https://aclanthology.org/W13-2020 %P 135-138 %0 Conference Proceedings %T Ontology-based semantic annotation: an automatic hybrid rule-based method %A Bannour, Sondes %A Audibert, Laurent %A Soldano, Henry %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F bannour-etal-2013-ontology %U https://aclanthology.org/W13-2021 %P 139-143 %0 Conference Proceedings %T Building A Contrasting Taxa Extractor for Relation Identification from Assertions: BIOlogical Taxonomy & Ontology Phrase Extraction System %A Grouin, Cyril %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F grouin-2013-building %U https://aclanthology.org/W13-2022 %P 144-152 %0 Conference Proceedings %T BioNLP Shared Task 2013 – An overview of the Genic Regulation Network Task %A Bossy, Robert %A Bessières, Philippe %A Nédellec, Claire %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F bossy-etal-2013-bionlp %U https://aclanthology.org/W13-2023 %P 153-160 %0 Conference Proceedings %T BioNLP shared Task 2013 – An Overview of the Bacteria Biotope Task %A Bossy, Robert %A Golik, Wiktoria %A Ratkovic, Zorana %A Bessières, Philippe %A Nédellec, Claire %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F bossy-etal-2013-bionlp-shared %U https://aclanthology.org/W13-2024 %P 161-169 %0 Conference Proceedings %T Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules %A Karadeniz, İlknur %A Özgür, Arzucan %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F karadeniz-ozgur-2013-bacteria %U https://aclanthology.org/W13-2025 %P 170-177 %0 Conference Proceedings %T Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules %A Žitnik, Slavko %A Žitnik, Marinka %A Zupan, Blaž %A Bajec, Marko %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F zitnik-etal-2013-extracting %U https://aclanthology.org/W13-2026 %P 178-187 %0 Conference Proceedings %T IRISA participation to BioNLP-ST13: lazy-learning and information retrieval for information extraction tasks %A Claveau, Vincent %Y Nédellec, Claire %Y Bossy, Robert %Y Kim, Jin-Dong %Y Kim, Jung-jae %Y Ohta, Tomoko %Y Pyysalo, Sampo %Y Zweigenbaum, Pierre %S Proceedings of the BioNLP Shared Task 2013 Workshop %D 2013 %8 August %I Association for Computational Linguistics %C Sofia, Bulgaria %F claveau-2013-irisa %U https://aclanthology.org/W13-2027 %P 188-196