Proceedings of the BioNLP Shared Task 2013 Workshop

Claire Nédellec, Robert Bossy, Jin-Dong Kim, Jung-jae Kim, Tomoko Ohta, Sampo Pyysalo, Pierre Zweigenbaum (Editors)


Anthology ID:
W13-20
Month:
August
Year:
2013
Address:
Sofia, Bulgaria
Venues:
BioNLP | WS
SIG:
Publisher:
Association for Computational Linguistics
URL:
https://aclanthology.org/W13-20
DOI:
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PDF:
https://aclanthology.org/W13-20.pdf

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Proceedings of the BioNLP Shared Task 2013 Workshop
Claire Nédellec | Robert Bossy | Jin-Dong Kim | Jung-jae Kim | Tomoko Ohta | Sampo Pyysalo | Pierre Zweigenbaum

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Overview of BioNLP Shared Task 2013
Claire Nédellec | Robert Bossy | Jin-Dong Kim | Jung-jae Kim | Tomoko Ohta | Sampo Pyysalo | Pierre Zweigenbaum

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The Genia Event Extraction Shared Task, 2013 Edition - Overview
Jin-Dong Kim | Yue Wang | Yamamoto Yasunori

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TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task
Jari Björne | Tapio Salakoski

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EVEX in ST’13: Application of a large-scale text mining resource to event extraction and network construction
Kai Hakala | Sofie Van Landeghem | Tapio Salakoski | Yves Van de Peer | Filip Ginter

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Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data
Andrew MacKinlay | David Martinez | Antonio Jimeno Yepes | Haibin Liu | W. John Wilbur | Karin Verspoor

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Biomedical Event Extraction by Multi-class Classification of Pairs of Text Entities
Xiao Liu | Antoine Bordes | Yves Grandvalet

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GRO Task: Populating the Gene Regulation Ontology with events and relations
Jung-jae Kim | Xu Han | Vivian Lee | Dietrich Rebholz-Schuhmann

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Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013
Sampo Pyysalo | Tomoko Ohta | Sophia Ananiadou

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Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013
Tomoko Ohta | Sampo Pyysalo | Rafal Rak | Andrew Rowley | Hong-Woo Chun | Sung-Jae Jung | Sung-Pil Choi | Sophia Ananiadou | Jun’ichi Tsujii

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Generalizing an Approximate Subgraph Matching-based System to Extract Events in Molecular Biology and Cancer Genetics
Haibin Liu | Karin Verspoor | Donald C. Comeau | Andrew MacKinlay | W. John Wilbur

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Performance and limitations of the linguistically motivated Cocoa/Peaberry system in a broad biological domain.
SV Ramanan | P. Senthil Nathan

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NaCTeM EventMine for BioNLP 2013 CG and PC tasks
Makoto Miwa | Sophia Ananiadou

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BioNLP Shared Task 2013: Supporting Resources
Pontus Stenetorp | Wiktoria Golik | Thierry Hamon | Donald C. Comeau | Rezarta Islamaj Doğan | Haibin Liu | W. John Wilbur

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A fast rule-based approach for biomedical event extraction
Quoc-Chinh Bui | David Campos | Erik van Mulligen | Jan Kors

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Improving Feature-Based Biomedical Event Extraction System by Integrating Argument Information
Lishuang Li | Yiwen Wang | Degen Huang

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UZH in BioNLP 2013
Gerold Schneider | Simon Clematide | Tilia Ellendorff | Don Tuggener | Fabio Rinaldi | Gintarė Grigonytė

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A Hybrid approach for biomedical event extraction
Xuan Quang Pham | Minh Quang Le | Bao Quoc Ho

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Identification of Genia Events using Multiple Classifiers
Roland Roller | Mark Stevenson

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Exploring a Probabilistic Earley Parser for Event Composition in Biomedical Texts
Mai-Vu Tran | Nigel Collier | Hoang-Quynh Le | Van-Thuy Phi | Thanh-Binh Pham

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Detecting Relations in the Gene Regulation Network
Thomas Provoost | Marie-Francine Moens

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Ontology-based semantic annotation: an automatic hybrid rule-based method
Sondes Bannour | Laurent Audibert | Henry Soldano

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Building A Contrasting Taxa Extractor for Relation Identification from Assertions: BIOlogical Taxonomy & Ontology Phrase Extraction System
Cyril Grouin

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BioNLP Shared Task 2013 – An overview of the Genic Regulation Network Task
Robert Bossy | Philippe Bessières | Claire Nédellec

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BioNLP shared Task 2013 – An Overview of the Bacteria Biotope Task
Robert Bossy | Wiktoria Golik | Zorana Ratkovic | Philippe Bessières | Claire Nédellec

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Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules
İlknur Karadeniz | Arzucan Özgür

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Extracting Gene Regulation Networks Using Linear-Chain Conditional Random Fields and Rules
Slavko Žitnik | Marinka Žitnik | Blaž Zupan | Marko Bajec

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IRISA participation to BioNLP-ST13: lazy-learning and information retrieval for information extraction tasks
Vincent Claveau