Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor 2015-07 Association for Computational Linguistics Beijing, China text conference publication ws-2015-bionlp https://aclanthology.org/W15-3800/ Complex Event Extraction using DRUM James Allen author Will de Beaumont author Lucian Galescu author Choh Man Teng author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication allen-etal-2015-complex 10.18653/v1/W15-3801 https://aclanthology.org/W15-3801/ 2015-07 1 11 Making the most of limited training data using distant supervision Roland Roller author Mark Stevenson author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication roller-stevenson-2015-making 10.18653/v1/W15-3802 https://aclanthology.org/W15-3802/ 2015-07 12 20 An extended dependency graph for relation extraction in biomedical texts Yifan Peng author Samir Gupta author Cathy H Wu author K Vijay-Shanker author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication peng-etal-2015-extended 10.18653/v1/W15-3803 https://aclanthology.org/W15-3803/ 2015-07 21 30 Event Extraction in pieces:Tackling the partial event identification problem on unseen corpora Chrysoula Zerva author Sophia Ananiadou author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication zerva-ananiadou-2015-event 10.18653/v1/W15-3804 https://aclanthology.org/W15-3804/ 2015-07 31 41 Extracting Biological Pathway Models From NLP Event Representations Michael Spranger author Sucheendra Palaniappan author Samik Ghosh author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication spranger-etal-2015-extracting 10.18653/v1/W15-3805 https://aclanthology.org/W15-3805/ 2015-07 42 51 Shallow Training is cheap but is it good enough? Experiments with Medical Fact Coding Ramesh Nallapati author Radu Florian author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication nallapati-florian-2015-shallow 10.18653/v1/W15-3806 https://aclanthology.org/W15-3806/ 2015-07 52 60 Stacked Generalization for Medical Concept Extraction from Clinical Notes Youngjun Kim author Ellen Riloff author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication kim-riloff-2015-stacked 10.18653/v1/W15-3807 https://aclanthology.org/W15-3807/ 2015-07 61 70 Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs Mohsen Hassan author Olfa Makkaoui author Adrien Coulet author Yannick Toussaint author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication hassan-etal-2015-extracting 10.18653/v1/W15-3808 https://aclanthology.org/W15-3808/ 2015-07 71 80 Extracting Time Expressions from Clinical Text Timothy Miller author Steven Bethard author Dmitriy Dligach author Chen Lin author Guergana Savova author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication miller-etal-2015-extracting 10.18653/v1/W15-3809 https://aclanthology.org/W15-3809/ 2015-07 81 91 Exploiting Task-Oriented Resources to Learn Word Embeddings for Clinical Abbreviation Expansion Yue Liu author Tao Ge author Kusum Mathews author Heng Ji author Deborah McGuinness author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication liu-etal-2015-exploiting 10.18653/v1/W15-3810 https://aclanthology.org/W15-3810/ 2015-07 92 97 Semantic Type Classification of Common Words in Biomedical Noun Phrases Amy Siu author Gerhard Weikum author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication siu-weikum-2015-semantic 10.18653/v1/W15-3811 https://aclanthology.org/W15-3811/ 2015-07 98 103 CoMAGD: Annotation of Gene-Depression Relations Rize Jin author Jinseon You author Jin-Woo Chung author Hee-Jin Lee author Maria Wolters author Jong Park author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication jin-etal-2015-comagd 10.18653/v1/W15-3812 https://aclanthology.org/W15-3812/ 2015-07 104 113 Lexical Characteristics Analysis of Chinese Clinical Documents Meizhi Ju author Haomin Li author Huilong Duan author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication ju-etal-2015-lexical 10.18653/v1/W15-3813 https://aclanthology.org/W15-3813/ 2015-07 114 120 Using word embedding for bio-event extraction Chen Li author Runqing Song author Maria Liakata author Andreas Vlachos author Stephanie Seneff author Xiangrong Zhang author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication li-etal-2015-using-word 10.18653/v1/W15-3814 https://aclanthology.org/W15-3814/ 2015-07 121 126 Measuring the readability of medical research journal abstracts Samuel J Severance author K Bretonnel Cohen author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication severance-cohen-2015-measuring 10.18653/v1/W15-3815 https://aclanthology.org/W15-3815/ 2015-07 127 133 Translating Electronic Health Record Notes from English to Spanish: A Preliminary Study Weisong Liu author Shu Cai author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication liu-cai-2015-translating 10.18653/v1/W15-3816 https://aclanthology.org/W15-3816/ 2015-07 134 140 Automatic Detection of Answers to Research Questions from Medline Abstracts Abdulaziz Alamri author Mark Stevenson author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication alamri-stevenson-2015-automatic 10.18653/v1/W15-3817 https://aclanthology.org/W15-3817/ 2015-07 141 146 A preliminary study on automatic identification of patient smoking status in unstructured electronic health records Jitendra Jonnagaddala author Hong-Jie Dai author Pradeep Ray author Siaw-Teng Liaw author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication jonnagaddala-etal-2015-preliminary 10.18653/v1/W15-3818 https://aclanthology.org/W15-3818/ 2015-07 147 151 Restoring the intended structure of Hungarian ophthalmology documents Borbála Siklósi author Attila Novák author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication siklosi-novak-2015-restoring 10.18653/v1/W15-3819 https://aclanthology.org/W15-3819/ 2015-07 152 157 Evaluating distributed word representations for capturing semantics of biomedical concepts Muneeb TH author Sunil Sahu author Ashish Anand author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication th-etal-2015-evaluating 10.18653/v1/W15-3820 https://aclanthology.org/W15-3820/ 2015-07 158 163 Investigating Public Health Surveillance using Twitter Antonio Jimeno Yepes author Andrew MacKinlay author Bo Han author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication jimeno-yepes-etal-2015-investigating 10.18653/v1/W15-3821 https://aclanthology.org/W15-3821/ 2015-07 164 170 Clinical Abbreviation Disambiguation Using Neural Word Embeddings Yonghui Wu author Jun Xu author Yaoyun Zhang author Hua Xu author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication wu-etal-2015-clinical 10.18653/v1/W15-3822 https://aclanthology.org/W15-3822/ 2015-07 171 176 Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing Na Hong author Dingcheng Li author Yue Yu author Hongfang Liu author Christopher G Chute author Guoqian Jiang author 2015-07 text Proceedings of BioNLP 15 Kevin Bretonnel Cohen editor Dina Demner-Fushman editor Sophia Ananiadou editor Jun-ichi Tsujii editor Association for Computational Linguistics Beijing, China conference publication hong-etal-2015-representing 10.18653/v1/W15-3823 https://aclanthology.org/W15-3823/ 2015-07 177 182