Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
2016-08
Association for Computational Linguistics
Berlin, Germany
text
conference publication
ws-2016-biomedical
10.18653/v1/W16-29
https://aclanthology.org/W16-2900
A Machine Learning Approach to Clinical Terms Normalization
José
Castaño
author
María
Laura
Gambarte
author
Hee
Joon
Park
author
Maria
del Pilar Avila Williams
author
David
Pérez
author
Fernando
Campos
author
Daniel
Luna
author
Sonia
Benítez
author
Hernán
Berinsky
author
Sofía
Zanetti
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
castano-etal-2016-machine
10.18653/v1/W16-2901
https://aclanthology.org/W16-2901
2016-08
1
11
Improved Semantic Representation for Domain-Specific Entities
Mohammad
Taher
Pilehvar
author
Nigel
Collier
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
pilehvar-collier-2016-improved
10.18653/v1/W16-2902
https://aclanthology.org/W16-2902
2016-08
12
16
Identification, characterization, and grounding of gradable terms in clinical text
Chaitanya
Shivade
author
Marie-Catherine
de Marneffe
author
Eric
Fosler-Lussier
author
Albert
M
Lai
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
shivade-etal-2016-identification
10.18653/v1/W16-2903
https://aclanthology.org/W16-2903
2016-08
17
26
Graph-based Semi-supervised Gene Mention Tagging
Golnar
Sheikhshab
author
Elizabeth
Starks
author
Aly
Karsan
author
Anoop
Sarkar
author
Inanc
Birol
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
sheikhshab-etal-2016-graph
10.18653/v1/W16-2904
https://aclanthology.org/W16-2904
2016-08
27
35
Feature Derivation for Exploitation of Distant Annotation via Pattern Induction against Dependency Parses
Dayne
Freitag
author
John
Niekrasz
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
freitag-niekrasz-2016-feature
10.18653/v1/W16-2905
https://aclanthology.org/W16-2905
2016-08
36
45
Inferring Implicit Causal Relationships in Biomedical Literature
Halil
Kilicoglu
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
kilicoglu-2016-inferring
10.18653/v1/W16-2906
https://aclanthology.org/W16-2906
2016-08
46
55
SnapToGrid: From Statistical to Interpretable Models for Biomedical Information Extraction
Marco
A
Valenzuela-Escárcega
author
Gus
Hahn-Powell
author
Dane
Bell
author
Mihai
Surdeanu
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
valenzuela-escarcega-etal-2016-snaptogrid
10.18653/v1/W16-2907
https://aclanthology.org/W16-2907
2016-08
56
65
Character based String Kernels for Bio-Entity Relation Detection
Ritambhara
Singh
author
Yanjun
Qi
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
singh-qi-2016-character
10.18653/v1/W16-2908
https://aclanthology.org/W16-2908
2016-08
66
71
Disambiguation of entities in MEDLINE abstracts by combining MeSH terms with knowledge
Amy
Siu
author
Patrick
Ernst
author
Gerhard
Weikum
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
siu-etal-2016-disambiguation
10.18653/v1/W16-2909
https://aclanthology.org/W16-2909
2016-08
72
76
Using Distributed Representations to Disambiguate Biomedical and Clinical Concepts
Stéphan
Tulkens
author
Simon
Suster
author
Walter
Daelemans
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
tulkens-etal-2016-using
10.18653/v1/W16-2910
https://aclanthology.org/W16-2910
2016-08
77
82
Unsupervised Document Classification with Informed Topic Models
Timothy
Miller
author
Dmitriy
Dligach
author
Guergana
Savova
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
miller-etal-2016-unsupervised
10.18653/v1/W16-2911
https://aclanthology.org/W16-2911
2016-08
83
91
Vocabulary Development To Support Information Extraction of Substance Abuse from Psychiatry Notes
Sumithra
Velupillai
author
Danielle
L
Mowery
author
Mike
Conway
author
John
Hurdle
author
Brent
Kious
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
velupillai-etal-2016-vocabulary
10.18653/v1/W16-2912
https://aclanthology.org/W16-2912
2016-08
92
101
Syntactic analyses and named entity recognition for PubMed and PubMed Central — up-to-the-minute
Kai
Hakala
author
Suwisa
Kaewphan
author
Tapio
Salakoski
author
Filip
Ginter
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
hakala-etal-2016-syntactic
10.18653/v1/W16-2913
https://aclanthology.org/W16-2913
2016-08
102
107
Improving Temporal Relation Extraction with Training Instance Augmentation
Chen
Lin
author
Timothy
Miller
author
Dmitriy
Dligach
author
Steven
Bethard
author
Guergana
Savova
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
lin-etal-2016-improving
10.18653/v1/W16-2914
https://aclanthology.org/W16-2914
2016-08
108
113
Using Centroids of Word Embeddings and Word Mover’s Distance for Biomedical Document Retrieval in Question Answering
Georgios-Ioannis
Brokos
author
Prodromos
Malakasiotis
author
Ion
Androutsopoulos
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
brokos-etal-2016-using
10.18653/v1/W16-2915
https://aclanthology.org/W16-2915
2016-08
114
118
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway
Michael
Spranger
author
Sucheendra
Palaniappan
author
Samik
Gosh
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
spranger-etal-2016-measuring
10.18653/v1/W16-2916
https://aclanthology.org/W16-2916
2016-08
119
127
Construction of a Personal Experience Tweet Corpus for Health Surveillance
Keyuan
Jiang
author
Ricardo
Calix
author
Matrika
Gupta
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
jiang-etal-2016-construction
10.18653/v1/W16-2917
https://aclanthology.org/W16-2917
2016-08
128
135
Modelling the Combination of Generic and Target Domain Embeddings in a Convolutional Neural Network for Sentence Classification
Nut
Limsopatham
author
Nigel
Collier
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
limsopatham-collier-2016-modelling
10.18653/v1/W16-2918
https://aclanthology.org/W16-2918
2016-08
136
140
PubTermVariants: biomedical term variants and their use for PubMed search
Lana
Yeganova
author
Won
Kim
author
Sun
Kim
author
Rezarta
Islamaj Doğan
author
Wanli
Liu
author
Donald
C
Comeau
author
Zhiyong
Lu
author
W
John
Wilbur
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
yeganova-etal-2016-pubtermvariants
10.18653/v1/W16-2919
https://aclanthology.org/W16-2919
2016-08
141
145
This before That: Causal Precedence in the Biomedical Domain
Gus
Hahn-Powell
author
Dane
Bell
author
Marco
A
Valenzuela-Escárcega
author
Mihai
Surdeanu
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
hahn-powell-etal-2016-causal
10.18653/v1/W16-2920
https://aclanthology.org/W16-2920
2016-08
146
155
Syntactic methods for negation detection in radiology reports in Spanish
Viviana
Cotik
author
Vanesa
Stricker
author
Jorge
Vivaldi
author
Horacio
Rodriguez
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
cotik-etal-2016-syntactic
10.18653/v1/W16-2921
https://aclanthology.org/W16-2921
2016-08
156
165
How to Train good Word Embeddings for Biomedical NLP
Billy
Chiu
author
Gamal
Crichton
author
Anna
Korhonen
author
Sampo
Pyysalo
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
chiu-etal-2016-train
10.18653/v1/W16-2922
https://aclanthology.org/W16-2922
2016-08
166
174
An Information Foraging Approach to Determining the Number of Relevant Features
Brian
Connolly
author
Benjamin
Glass
author
John
Pestian
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
connolly-etal-2016-information
10.18653/v1/W16-2923
https://aclanthology.org/W16-2923
2016-08
175
180
Assessing the Feasibility of an Automated Suggestion System for Communicating Critical Findings from Chest Radiology Reports to Referring Physicians
Brian
E
Chapman
author
Danielle
L
Mowery
author
Evan
Narasimhan
author
Neel
Patel
author
Wendy
Chapman
author
Marta
Heilbrun
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
chapman-etal-2016-assessing
10.18653/v1/W16-2924
https://aclanthology.org/W16-2924
2016-08
181
185
Building a dictionary of lexical variants for phenotype descriptors
Simon
Kocbek
author
Tudor
Groza
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
kocbek-groza-2016-building
10.18653/v1/W16-2925
https://aclanthology.org/W16-2925
2016-08
186
190
Applying deep learning on electronic health records in Swedish to predict healthcare-associated infections
Olof
Jacobson
author
Hercules
Dalianis
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
jacobson-dalianis-2016-applying
10.18653/v1/W16-2926
https://aclanthology.org/W16-2926
2016-08
191
195
Identifying First Episodes of Psychosis in Psychiatric Patient Records using Machine Learning
Genevieve
Gorrell
author
Sherifat
Oduola
author
Angus
Roberts
author
Tom
Craig
author
Craig
Morgan
author
Rob
Stewart
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
gorrell-etal-2016-identifying
10.18653/v1/W16-2927
https://aclanthology.org/W16-2927
2016-08
196
205
Relation extraction from clinical texts using domain invariant convolutional neural network
Sunil
Sahu
author
Ashish
Anand
author
Krishnadev
Oruganty
author
Mahanandeeshwar
Gattu
author
2016-08
text
Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin
Bretonnel
Cohen
editor
Dina
Demner-Fushman
editor
Sophia
Ananiadou
editor
Jun-ichi
Tsujii
editor
Association for Computational Linguistics
Berlin, Germany
conference publication
sahu-etal-2016-relation
10.18653/v1/W16-2928
https://aclanthology.org/W16-2928
2016-08
206
215