Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor 2016-08 Association for Computational Linguistics Berlin, Germany text conference publication ws-2016-bionlp https://aclanthology.org/W16-3000/ Overview of the Regulatory Network of Plant Seed Development (SeeDev) Task at the BioNLP Shared Task 2016. Estelle Chaix author Bertrand Dubreucq author Abdelhak Fatihi author Dialekti Valsamou author Robert Bossy author Mouhamadou Ba author Louise Deléger author Pierre Zweigenbaum author Philippe Bessières author Loic Lepiniec author Claire Nédellec author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication chaix-etal-2016-overview 10.18653/v1/W16-3001 https://aclanthology.org/W16-3001/ 2016-08 1 11 Overview of the Bacteria Biotope Task at BioNLP Shared Task 2016 Louise Deléger author Robert Bossy author Estelle Chaix author Mouhamadou Ba author Arnaud Ferré author Philippe Bessières author Claire Nédellec author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication deleger-etal-2016-overview 10.18653/v1/W16-3002 https://aclanthology.org/W16-3002/ 2016-08 12 22 Refactoring the Genia Event Extraction Shared Task Toward a General Framework for IE-Driven KB Development Jin-Dong Kim author Yue Wang author Nicola Colic author Seung Han Beak author Yong Hwan Kim author Min Song author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication kim-etal-2016-refactoring 10.18653/v1/W16-3003 https://aclanthology.org/W16-3003/ 2016-08 23 31 LitWay, Discriminative Extraction for Different Bio-Events Chen Li author Zhiqiang Rao author Xiangrong Zhang author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication li-etal-2016-litway 10.18653/v1/W16-3004 https://aclanthology.org/W16-3004/ 2016-08 32 41 VERSE: Event and Relation Extraction in the BioNLP 2016 Shared Task Jake Lever author Steven JM Jones author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication lever-jones-2016-verse 10.18653/v1/W16-3005 https://aclanthology.org/W16-3005/ 2016-08 42 49 A dictionary- and rule-based system for identification of bacteria and habitats in text Helen V Cook author Evangelos Pafilis author Lars Juhl Jensen author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication cook-etal-2016-dictionary 10.18653/v1/W16-3006 https://aclanthology.org/W16-3006/ 2016-08 50 55 Ontology-Based Categorization of Bacteria and Habitat Entities using Information Retrieval Techniques Mert Tiftikci author Hakan Şahin author Berfu Büyüköz author Alper Yayıkçı author Arzucan Özgür author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication tiftikci-etal-2016-ontology 10.18653/v1/W16-3007 https://aclanthology.org/W16-3007/ 2016-08 56 63 Identification of Mentions and Relations between Bacteria and Biotope from PubMed Abstracts Cyril Grouin author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication grouin-2016-identification 10.18653/v1/W16-3008 https://aclanthology.org/W16-3008/ 2016-08 64 72 Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016 Farrokh Mehryary author Jari Björne author Sampo Pyysalo author Tapio Salakoski author Filip Ginter author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication mehryary-etal-2016-deep 10.18653/v1/W16-3009 https://aclanthology.org/W16-3009/ 2016-08 73 81 SeeDev Binary Event Extraction using SVMs and a Rich Feature Set Nagesh C. Panyam author Gitansh Khirbat author Karin Verspoor author Trevor Cohn author Kotagiri Ramamohanarao author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication c-panyam-etal-2016-seedev 10.18653/v1/W16-3010 https://aclanthology.org/W16-3010/ 2016-08 82 87 Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision Andre Lamurias author Miguel J Rodrigues author Luka A Clarke author Francisco M Couto author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication lamurias-etal-2016-extraction 10.18653/v1/W16-3011 https://aclanthology.org/W16-3011/ 2016-08 88 92 DUTIR in BioNLP-ST 2016: Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations Honglei Li author Jianhai Zhang author Jian Wang author Hongfei Lin author Zhihao Yang author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication li-etal-2016-dutir 10.18653/v1/W16-3012 https://aclanthology.org/W16-3012/ 2016-08 93 100 Extracting Biomedical Event Using Feature Selection and Word Representation Xinyu He author Lishuang Li author Jieqiong Zheng author Meiyue Qin author 2016-08 text Proceedings of the 4th BioNLP Shared Task Workshop Claire Nėdellec editor Robert Bossy editor Jin-Dong Kim editor Association for Computational Linguistics Berlin, Germany conference publication he-etal-2016-extracting 10.18653/v1/W16-3013 https://aclanthology.org/W16-3013/ 2016-08 101