%0 Conference Proceedings %T Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %E Ananiadou, Sophia %E Batista-Navarro, Riza %E Cohen, Kevin Bretonnel %E Demner-Fushman, Dina %E Thompson, Paul %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F ws-2016-building %U https://aclanthology.org/W16-5100 %0 Conference Proceedings %T Cancer Hallmark Text Classification Using Convolutional Neural Networks %A Baker, Simon %A Korhonen, Anna %A Pyysalo, Sampo %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F baker-etal-2016-cancer %U https://aclanthology.org/W16-5101 %P 1-9 %0 Conference Proceedings %T Learning Orthographic Features in Bi-directional LSTM for Biomedical Named Entity Recognition %A Limsopatham, Nut %A Collier, Nigel %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F limsopatham-collier-2016-learning %U https://aclanthology.org/W16-5102 %P 10-19 %0 Conference Proceedings %T Building Content-driven Entity Networks for Scarce Scientific Literature using Content Information %A Amplayo, Reinald Kim %A Song, Min %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F amplayo-song-2016-building %U https://aclanthology.org/W16-5103 %P 20-29 %0 Conference Proceedings %T Named Entity Recognition in Swedish Health Records with Character-Based Deep Bidirectional LSTMs %A Almgren, Simon %A Pavlov, Sean %A Mogren, Olof %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F almgren-etal-2016-named %U https://aclanthology.org/W16-5104 %P 30-39 %0 Conference Proceedings %T Entity-Supported Summarization of Biomedical Abstracts %A Schulze, Frederik %A Neves, Mariana %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F schulze-neves-2016-entity %U https://aclanthology.org/W16-5105 %P 40-49 %0 Conference Proceedings %T Fully unsupervised low-dimensional representation of adverse drug reaction events through distributional semantics %A Pérez, Alicia %A Casillas, Arantza %A Gojenola, Koldo %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F perez-etal-2016-fully %U https://aclanthology.org/W16-5106 %P 50-59 %0 Conference Proceedings %T A Dataset for ICD-10 Coding of Death Certificates: Creation and Usage %A Lavergne, Thomas %A Névéol, Aurélie %A Robert, Aude %A Grouin, Cyril %A Rey, Grégoire %A Zweigenbaum, Pierre %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F lavergne-etal-2016-dataset %U https://aclanthology.org/W16-5107 %P 60-69 %0 Conference Proceedings %T A Corpus of Tables in Full-Text Biomedical Research Publications %A Shmanina, Tatyana %A Zukerman, Ingrid %A Cheam, Ai Lee %A Bochynek, Thomas %A Cavedon, Lawrence %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F shmanina-etal-2016-corpus %U https://aclanthology.org/W16-5108 %P 70-79 %0 Conference Proceedings %T Supervised classification of end-of-lines in clinical text with no manual annotation %A Zweigenbaum, Pierre %A Grouin, Cyril %A Lavergne, Thomas %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F zweigenbaum-etal-2016-supervised %U https://aclanthology.org/W16-5109 %P 80-88 %0 Conference Proceedings %T BioDCA Identifier: A System for Automatic Identification of Discourse Connective and Arguments from Biomedical Text %A Gopalan, Sindhuja %A Lalitha Devi, Sobha %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F gopalan-lalitha-devi-2016-biodca %U https://aclanthology.org/W16-5110 %P 89-98 %0 Conference Proceedings %T Data, tools and resources for mining social media drug chatter %A Sarker, Abeed %A Gonzalez, Graciela %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F sarker-gonzalez-2016-data %U https://aclanthology.org/W16-5111 %P 99-107 %0 Conference Proceedings %T Detection of Text Reuse in French Medical Corpora %A D’hondt, Eva %A Grouin, Cyril %A Névéol, Aurélie %A Stamatatos, Efstathios %A Zweigenbaum, Pierre %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F dhondt-etal-2016-detection %U https://aclanthology.org/W16-5112 %P 108-114 %0 Conference Proceedings %T Negation Detection in Clinical Reports Written in German %A Cotik, Viviana %A Roller, Roland %A Xu, Feiyu %A Uszkoreit, Hans %A Budde, Klemens %A Schmidt, Danilo %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F cotik-etal-2016-negation %U https://aclanthology.org/W16-5113 %P 115-124 %0 Conference Proceedings %T Scoring Disease-Medication Associations using Advanced NLP, Machine Learning, and Multiple Content Sources %A Dandala, Bharath %A Devarakonda, Murthy %A Bornea, Mihaela %A Nielson, Christopher %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F dandala-etal-2016-scoring %U https://aclanthology.org/W16-5114 %P 125-133 %0 Conference Proceedings %T Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types %A Vishnyakova, Dina %A Rodriguez-Esteban, Raul %A Ozol, Khan %A Rinaldi, Fabio %Y Ananiadou, Sophia %Y Batista-Navarro, Riza %Y Cohen, Kevin Bretonnel %Y Demner-Fushman, Dina %Y Thompson, Paul %S Proceedings of the Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM2016) %D 2016 %8 December %I The COLING 2016 Organizing Committee %C Osaka, Japan %F vishnyakova-etal-2016-author %U https://aclanthology.org/W16-5115 %P 134-142