Andrew Chatr-aryamontri
2017
BioCreative VI Precision Medicine Track: creating a training corpus for mining protein-protein interactions affected by mutations
Rezarta Islamaj Doğan
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Andrew Chatr-aryamontri
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Sun Kim
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Chih-Hsuan Wei
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Yifan Peng
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Donald Comeau
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Zhiyong Lu
BioNLP 2017
The Precision Medicine Track in BioCre-ative VI aims to bring together the Bi-oNLP community for a novel challenge focused on mining the biomedical litera-ture in search of mutations and protein-protein interactions (PPI). In order to support this track with an effective train-ing dataset with limited curator time, the track organizers carefully reviewed Pub-Med articles from two different sources: curated public PPI databases, and the re-sults of state-of-the-art public text mining tools. We detail here the data collection, manual review and annotation process and describe this training corpus charac-teristics. We also describe a corpus per-formance baseline. This analysis will provide useful information to developers and researchers for comparing and devel-oping innovative text mining approaches for the BioCreative VI challenge and other Precision Medicine related applica-tions.
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Co-authors
- Rezarta Islamaj Dogan 1
- Sun Kim 1
- Chih-Hsuan Wei 1
- Yifan Peng 1
- Donald C. Comeau 1
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