This paper describes Optum’s submission to the Biomedical Translation task of the seventh conference on Machine Translation (WMT22). The task aims at promoting the development and evaluation of machine translation systems in their ability to handle challenging domain-specific biomedical data. We made submissions to two sub-tracks of ClinSpEn 2022, namely, ClinSpEn-CC (clinical cases) and ClinSpEn-OC (ontology concepts). These sub-tasks aim to test translation from English to Spanish. Our approach involves fine-tuning a pre-trained transformer model using in-house clinical domain data and the biomedical data provided by WMT. The fine-tuned model results in a test BLEU score of 38.12 in the ClinSpEn-CC (clinical cases) subtask, which is a gain of 1.23 BLEU compared to the pre-trained model.

This paper describes experiments undertaken and their results as part of the BioNLP MEDIQA 2021 challenge. We participated in Task 3: Radiology Report Summarization. Multiple runs were submitted for evaluation, from solutions leveraging transfer learning from pre-trained transformer models, which were then fine tuned on a subset of MIMIC-CXR, for abstractive report summarization. The task was evaluated using ROUGE and our best performing system obtained a ROUGE-2 score of 0.392.

Neural Machine Translation (NMT) is a deep learning based approach that has achieved outstanding results lately in the translation community. The performance of NMT systems, however, is dependent on the availability of large amounts of in-domain parallel corpora. The business enterprises in domains such as legal and healthcare require specialized vocabulary but translation systems trained for a general purpose do not cater to these needs. The data in these domains is either hard to acquire or is very small in comparison to public data sets. This is a detailed report of using an open-source library to implement a machine translation system and successfully customizing it for the needs of a particular client in the healthcare domain. This report details the chronological development of every component of this system, namely, extraction of data from in-domain healthcare documents, a pre-processing pipeline for the data, data alignment and augmentation, training and a fully automated and robust deployment pipeline. This work proposes an efficient way for the continuous deployment of newly trained deep learning models. The deployed translation models are optimized for both inference time and cost.