Honghan Wu


2024

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CMDL: A Large-Scale Chinese Multi-Defendant Legal Judgment Prediction Dataset
Wanhong Huang | Yi Feng | Chuanyi Li | Honghan Wu | Jidong Ge | Vincent Ng
Findings of the Association for Computational Linguistics: ACL 2024

Legal Judgment Prediction (LJP) has attracted significant attention in recent years. However, previous studies have primarily focused on cases involving only a single defendant, skipping multi-defendant cases due to complexity and difficulty. To advance research, we introduce CMDL, a large-scale real-world Chinese Multi-Defendant LJP dataset, which consists of over 393,945 cases with nearly 1.2 million defendants in total. For performance evaluation, we propose case-level evaluation metrics dedicated for the multi-defendant scenario. Experimental results on CMDL show existing SOTA approaches demonstrate weakness when applied to cases involving multiple defendants. We highlight several challenges that require attention and resolution.

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Knowlab’s Submission to L+M Shared Task: All you need is continued pretraining of chemistry texts even for molecule captioning
Yunsoo Kim | Honghan Wu
Proceedings of the 1st Workshop on Language + Molecules (L+M 2024)

This paper presents our submission to the L+M-24 shared task, focused on translating molecular structures into natural language descriptions, known as the molecule captioning task. We selected a small language model (SLM), Phi-3-mini-4k, to evaluate the impact of continued pretraining and instruction tuning for domain-specific chemical knowledge. The Phi-3 model was continued pretrained with 90M chemistry textbooks and abstracts, followed by instruction tuning on 150K question answering sets of SMILES and general chemistry knowledge. Despite the continued pretraining phase not including direct exposure to SMILES representations, it significantly enhanced the Phi-3 model’s performance, a 300% increase for the BLEU scores, in the molecule captioning task. The code and model are released at https://github.com/bluesky333/Phi3KnowChem to facilitate research in chemical small language modeling.

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KnowLab_AIMed at MEDIQA-CORR 2024: Chain-of-Though (CoT) prompting strategies for medical error detection and correction
Zhaolong Wu | Abul Hasan | Jinge Wu | Yunsoo Kim | Jason Cheung | Teng Zhang | Honghan Wu
Proceedings of the 6th Clinical Natural Language Processing Workshop

This paper describes our submission to the MEDIQA-CORR 2024 shared task for automatically detecting and correcting medical errors in clinical notes. We report results for three methods of few-shot In-Context Learning (ICL) augmented with Chain-of-Thought (CoT) and reason prompts using a large language model (LLM). In the first method, we manually analyse a subset of train and validation dataset to infer three CoT prompts by examining error types in the clinical notes. In the second method, we utilise the training dataset to prompt the LLM to deduce reasons about their correctness or incorrectness. The constructed CoTs and reasons are then augmented with ICL examples to solve the tasks of error detection, span identification, and error correction. Finally, we combine the two methods using a rule-based ensemble method. Across the three sub-tasks, our ensemble method achieves a ranking of 3rd for both sub-task 1 and 2, while securing 7th place in sub-task 3 among all submissions.

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MedExQA: Medical Question Answering Benchmark with Multiple Explanations
Yunsoo Kim | Jinge Wu | Yusuf Abdulle | Honghan Wu
Proceedings of the 23rd Workshop on Biomedical Natural Language Processing

This paper introduces MedExQA, a novel benchmark in medical question-answering, to evaluate large language models’ (LLMs) understanding of medical knowledge through explanations. By constructing datasets across five distinct medical specialties that are underrepresented in current datasets and further incorporating multiple explanations for each question-answer pair, we address a major gap in current medical QA benchmarks which is the absence of comprehensive assessments of LLMs’ ability to generate nuanced medical explanations. Our work highlights the importance of explainability in medical LLMs, proposes an effective methodology for evaluating models beyond classification accuracy, and sheds light on one specific domain, speech language pathology, where current LLMs including GPT4 lack good understanding. Our results show generation evaluation with multiple explanations aligns better with human assessment, highlighting an opportunity for a more robust automated comprehension assessment for LLMs. To diversify open-source medical LLMs (currently mostly based on Llama2), this work also proposes a new medical model, MedPhi-2, based on Phi-2 (2.7B). The model outperformed medical LLMs based on Llama2-70B in generating explanations, showing its effectiveness in the resource-constrained medical domain. We will share our benchmark datasets and the trained model.

2023

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KnowLab at RadSum23: comparing pre-trained language models in radiology report summarization
Jinge Wu | Daqian Shi | Abul Hasan | Honghan Wu
The 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks

This paper presents our contribution to the RadSum23 shared task organized as part of the BioNLP 2023. We compared state-of-the-art generative language models in generating high-quality summaries from radiology reports. A two-stage fine-tuning approach was introduced for utilizing knowledge learnt from different datasets. We evaluated the performance of our method using a variety of metrics, including BLEU, ROUGE, bertscore, CheXbert, and RadGraph. Our results revealed the potentials of different models in summarizing radiology reports and demonstrated the effectiveness of the two-stage fine-tuning approach. We also discussed the limitations and future directions of our work, highlighting the need for better understanding the architecture design’s effect and optimal way of fine-tuning accordingly in automatic clinical summarizations.

2022

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Edinburgh_UCL_Health@SMM4H’22: From Glove to Flair for handling imbalanced healthcare corpora related to Adverse Drug Events, Change in medication and self-reporting vaccination
Imane Guellil | Jinge Wu | Honghan Wu | Tony Sun | Beatrice Alex
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, Workshop & Shared Task

This paper reports on the performance of Edinburgh_UCL_Health’s models in the Social Media Mining for Health (SMM4H) 2022 shared tasks. Our team participated in the tasks related to the Identification of Adverse Drug Events (ADEs), the classification of change in medication (change-med) and the classification of self-report of vaccination (self-vaccine). Our best performing models are based on DeepADEMiner (with respective F1= 0.64, 0.62 and 0.39 for ADE identification), on a GloVe model trained on Twitter (with F1=0.11 for the change-med) and finally on a stack embedding including a layer of Glove embedding and two layers of Flair embedding (with F1= 0.77 for self-report).