Foundation models have demonstrated remarkable capabilities in handling diverse modalities and tasks, outperforming conventional artificial intelligence (AI) approaches that are highly task-specific and modality-reliant. In the medical domain, however, the development of comprehensive foundation models is constrained by limited access to diverse modalities and stringent privacy regulations. To address these constraints, this study introduces a novel knowledge injection approach, FedKIM, designed to scale the medical foundation model within a federated learning framework. FedKIM leverages lightweight local models to extract healthcare knowledge from private data and integrates this knowledge into a centralized foundation model using a designed adaptive Multitask Multimodal Mixture Of Experts (M³OE) module. This method not only preserves privacy but also enhances the model’s ability to handle complex medical tasks involving multiple modalities. Our extensive experiments across twelve tasks in seven modalities demonstrate the effectiveness of FedKIM in various settings, highlighting its potential to scale medical foundation models without direct access to sensitive data. Source codes are available at https://github.com/XiaochenWang-PSU/FedKIM.

The prevalent use of large language models (LLMs) in various domains has drawn attention to the issue of “hallucination”, which refers to instances where LLMs generate factually inaccurate or ungrounded information. Existing techniques usually identify hallucinations post-generation that cannot prevent their occurrence and suffer from inconsistent performance due to the influence of the instruction format and model style. In this paper, we introduce a novel pre-detection self-evaluation technique, referred to as SELF-FAMILIARITY, which focuses on evaluating the model’s familiarity with the concepts present in the input instruction and withholding the generation of response in case of unfamiliar concepts under the zero-resource setting, where external ground-truth or background information is not available. We also propose a new dataset Concept-7 focusing on the hallucinations caused by limited inner knowledge. We validate SELF-FAMILIARITY across four different large language models, demonstrating consistently superior performance compared to existing techniques. Our findings propose a significant shift towards preemptive strategies for hallucination mitigation in LLM assistants, promising improvements in reliability, applicability, and interpretability.

Parameter Efficient Fine-Tuning (PEFT) offers an efficient solution for fine-tuning large pretrained language models for downstream tasks. However, most PEFT strategies are manually designed, often resulting in suboptimal performance. Recent automatic PEFT approaches aim to address this but face challenges such as search space entanglement, inefficiency, and lack of integration between parameter budgets and search processes. To overcome these issues, we introduce a novel Budget-guided Iterative search strategy for automatic PEFT (BIPEFT), significantly enhancing search efficiency. BIPEFT employs a new iterative search strategy to disentangle the binary module and rank dimension search spaces. Additionally, we design early selection strategies based on parameter budgets, accelerating the learning process by gradually removing unimportant modules and fixing rank dimensions. Extensive experiments on public benchmarks demonstrate the superior performance of BIPEFT in achieving efficient and effective PEFT for downstream tasks with a low parameter budget.

Although pre-training has become a prevalent approach for addressing various biomedical tasks, the current efficacy of pre-trained models is hindered by their reliance on a limited scope of medical sources. This limitation results in data scarcity during pre-training and restricts the range of applicable downstream tasks. In response to these challenges, we develop MedCSP, a new pre-training strategy designed to bridge the gap between multimodal medical sources. MedCSP employs modality-level aggregation to unify patient data within individual sources. Additionally, leveraging temporal information and diagnosis history, MedCSP effectively captures explicit and implicit correlations between patients across different sources. To evaluate the proposed strategy, we conduct comprehensive experiments, where the experiments are based on 6 modalities from 2 real-world medical data sources, and MedCSP is evaluated on 4 tasks against 19 baselines, marking an initial yet essential step towards cross-source modeling in the medical domain.

Automatic International Classification of Diseases (ICD) coding plays a crucial role in the extraction of relevant information from clinical notes for proper recording and billing. One of the most important directions for boosting the performance of automatic ICD coding is modeling ICD code relations. However, current methods insufficiently model the intricate relationships among ICD codes and often overlook the importance of context in clinical notes. In this paper, we propose a novel approach, a contextualized and flexible framework, to enhance the learning of ICD code representations. Our approach, unlike existing methods, employs a dependent learning paradigm that considers the context of clinical notes in modeling all possible code relations. We evaluate our approach on six public ICD coding datasets and the experimental results demonstrate the effectiveness of our approach compared to state-of-the-art baselines.

Pretraining has proven to be a powerful technique in natural language processing (NLP), exhibiting remarkable success in various NLP downstream tasks. However, in the medical domain, existing pretrained models on electronic health records (EHR) fail to capture the hierarchical nature of EHR data, limiting their generalization capability across diverse downstream tasks using a single pretrained model. To tackle this challenge, this paper introduces a novel, general, and unified pretraining framework called MedHMP, specifically designed for hierarchically multimodal EHR data. The effectiveness of the proposed MedHMP is demonstrated through experimental results on eight downstream tasks spanning three levels. Comparisons against eighteen baselines further highlight the efficacy of our approach.

Intelligent medical services have attracted great research interests for providing automated medical consultation. However, the lack of corpora becomes a main obstacle to related research, particularly data from real scenarios. In this paper, we construct RealMedDial, a Chinese medical dialogue dataset based on real medical consultation. RealMedDial contains 2,637 medical dialogues and 24,255 utterances obtained from Chinese short-video clips of real medical consultations. We collected and annotated a wide range of meta-data with respect to medical dialogue including doctor profiles, hospital departments, diseases and symptoms for fine-grained analysis on language usage pattern and clinical diagnosis. We evaluate the performance of medical response generation, department routing and doctor recommendation on RealMedDial. Results show that RealMedDial are applicable to a wide range of NLP tasks with respect to medical dialogue.

Patients with low health literacy usually have difficulty understanding medical jargon and the complex structure of professional medical language. Although some studies are proposed to automatically translate expert language into layperson-understandable language, only a few of them focus on both accuracy and readability aspects simultaneously in the clinical domain. Thus, simplification of the clinical language is still a challenging task, but unfortunately, it is not yet fully addressed in previous work. To benchmark this task, we construct a new dataset named MedLane to support the development and evaluation of automated clinical language simplification approaches. Besides, we propose a new model called DECLARE that follows the human annotation procedure and achieves state-of-the-art performance compared with eight strong baselines. To fairly evaluate the performance, we also propose three specific evaluation metrics. Experimental results demonstrate the utility of the annotated MedLane dataset and the effectiveness of the proposed model DECLARE.

Medical report generation is one of the most challenging tasks in medical image analysis. Although existing approaches have achieved promising results, they either require a predefined template database in order to retrieve sentences or ignore the hierarchical nature of medical report generation. To address these issues, we propose MedWriter that incorporates a novel hierarchical retrieval mechanism to automatically extract both report and sentence-level templates for clinically accurate report generation. MedWriter first employs the Visual-Language Retrieval (VLR) module to retrieve the most relevant reports for the given images. To guarantee the logical coherence between generated sentences, the Language-Language Retrieval (LLR) module is introduced to retrieve relevant sentences based on the previous generated description. At last, a language decoder fuses image features and features from retrieved reports and sentences to generate meaningful medical reports. We verified the effectiveness of our model by automatic evaluation and human evaluation on two datasets, i.e., Open-I and MIMIC-CXR.

Paraphrase identification (PI), a fundamental task in natural language processing, is to identify whether two sentences express the same or similar meaning, which is a binary classification problem. Recently, BERT-like pre-trained language models have been a popular choice for the frameworks of various PI models, but almost all existing methods consider general domain text. When these approaches are applied to a specific domain, existing models cannot make accurate predictions due to the lack of professional knowledge. In light of this challenge, we propose a novel framework, namely , which can leverage the external unstructured Wikipedia knowledge to accurately identify paraphrases. We propose to mine outline knowledge of concepts related to given sentences from Wikipedia via BM25 model. After retrieving related outline knowledge, makes predictions based on both the semantic information of two sentences and the outline knowledge. Besides, we propose a gating mechanism to aggregate the semantic information-based prediction and the knowledge-based prediction. Extensive experiments are conducted on two public datasets: PARADE (a computer science domain dataset) and clinicalSTS2019 (a biomedical domain dataset). The results show that the proposed outperforms state-of-the-art methods.

This paper presents a novel framework, MGNER, for Multi-Grained Named Entity Recognition where multiple entities or entity mentions in a sentence could be non-overlapping or totally nested. Different from traditional approaches regarding NER as a sequential labeling task and annotate entities consecutively, MGNER detects and recognizes entities on multiple granularities: it is able to recognize named entities without explicitly assuming non-overlapping or totally nested structures. MGNER consists of a Detector that examines all possible word segments and a Classifier that categorizes entities. In addition, contextual information and a self-attention mechanism are utilized throughout the framework to improve the NER performance. Experimental results show that MGNER outperforms current state-of-the-art baselines up to 4.4% in terms of the F1 score among nested/non-overlapping NER tasks.